IL_5J5B_287

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

5J5B|1|DA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_287 not in the Motif Atlas

Homologous match to IL_7RQB_044

Geometric discrepancy: 0.2609

The information below is about IL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J5B|1|DA|G|1087
5J5B|1|DA|A|1088
5J5B|1|DA|A|1089
5J5B|1|DA|A|1090
5J5B|1|DA|G|1091
*
5J5B|1|DA|C|1100
5J5B|1|DA|U|1101
5J5B|1|DA|C|1102

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D5

50S ribosomal protein L36

Chain DJ

50S ribosomal protein L11