IL_5J5B_318

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

5J5B|1|DA|A|1938, 5J5B|1|DA|U|1944

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_318 not in the Motif Atlas

Homologous match to IL_5J7L_319

Geometric discrepancy: 0.0293

The information below is about IL_5J7L_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

5J5B|1|DA|C|1934
5J5B|1|DA|G|1935
5J5B|1|DA|A|1936
5J5B|1|DA|A|1937
5J5B|1|DA|A|1938
5J5B|1|DA|5MU|1939
5J5B|1|DA|U|1940
5J5B|1|DA|C|1941
5J5B|1|DA|C|1942
5J5B|1|DA|U|1943
5J5B|1|DA|U|1944
5J5B|1|DA|G|1945
*
5J5B|1|DA|C|1961
5J5B|1|DA|5MC|1962
5J5B|1|DA|U|1963
5J5B|1|DA|G|1964

Current chains

Chain DA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

50S ribosomal protein L2