IL_5J5B_325

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_325 not in the Motif Atlas

Homologous match to IL_5J7L_326

Geometric discrepancy: 0.0423

The information below is about IL_5J7L_326

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5J5B|1|DA|U|2085
5J5B|1|DA|U|2086
5J5B|1|DA|G|2087
*
5J5B|1|DA|C|2232
5J5B|1|DA|U|2233
5J5B|1|DA|G|2234

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2

Chain DY

50S ribosomal protein L28