IL_5J5B_333

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

5J5B|1|DA|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_333 not in the Motif Atlas

Homologous match to IL_5J7L_334

Geometric discrepancy: 0.076

The information below is about IL_5J7L_334

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5J5B|1|DA|U|2401
5J5B|1|DA|U|2402
5J5B|1|DA|C|2403
*
5J5B|1|DA|G|2414
5J5B|1|DA|G|2415

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L33

Chain D4

50S ribosomal protein L35

Chain DM

50S ribosomal protein L15