IL_5J5B_366

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

5J5B|1|BA|U|1030, 5J5B|1|BA|C|1031, 5J5B|1|BA|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J5B|1|BA|G|1003
5J5B|1|BA|A|1004
5J5B|1|BA|A|1005
5J5B|1|BA|G|1006
*
5J5B|1|BA|U|1023
5J5B|1|BA|G|1024
5J5B|1|BA|U|1025
5J5B|1|BA|G|1026
5J5B|1|BA|C|1027
5J5B|1|BA|C|1028
5J5B|1|BA|U|1029
5J5B|1|BA|U|1030
5J5B|1|BA|C|1031
5J5B|1|BA|G|1032
5J5B|1|BA|G|1033
5J5B|1|BA|G|1034
5J5B|1|BA|A|1035
5J5B|1|BA|A|1036
5J5B|1|BA|C|1037

Current chains

Chain BA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain BN

30S ribosomal protein S14