IL_5J5B_392

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGAGG*CCGACCUUGAAAUACC

Length

22 nucleotides

Bulged bases

5J5B|1|DA|A|2126, 5J5B|1|DA|G|2162, 5J5B|1|DA|A|2163, 5J5B|1|DA|C|2164, 5J5B|1|DA|C|2165, 5J5B|1|DA|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_392 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.0205

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5J5B|1|DA|G|2123
5J5B|1|DA|G|2124
5J5B|1|DA|G|2125
5J5B|1|DA|A|2126
5J5B|1|DA|G|2127
5J5B|1|DA|G|2128
*
5J5B|1|DA|C|2160
5J5B|1|DA|C|2161
5J5B|1|DA|G|2162
5J5B|1|DA|A|2163
5J5B|1|DA|C|2164
5J5B|1|DA|C|2165
5J5B|1|DA|U|2166
5J5B|1|DA|U|2167
5J5B|1|DA|G|2168
5J5B|1|DA|A|2169
5J5B|1|DA|A|2170
5J5B|1|DA|A|2171
5J5B|1|DA|U|2172
5J5B|1|DA|A|2173
5J5B|1|DA|C|2174
5J5B|1|DA|C|2175

Current chains

Chain DA

23S rRNA

Nearby chains