IL_5J5B_398

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGU*ACCCUUUAAUG

Length

31 nucleotides

Bulged bases

5J5B|1|DA|U|2111, 5J5B|1|DA|A|2114, 5J5B|1|DA|G|2115, 5J5B|1|DA|G|2116, 5J5B|1|DA|A|2117, 5J5B|1|DA|U|2118, 5J5B|1|DA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J5B|1|DA|C|2103
5J5B|1|DA|C|2104
5J5B|1|DA|U|2105
5J5B|1|DA|U|2106
5J5B|1|DA|G|2107
5J5B|1|DA|A|2108
5J5B|1|DA|U|2109
5J5B|1|DA|G|2110
5J5B|1|DA|U|2111
5J5B|1|DA|G|2112
5J5B|1|DA|U|2113
5J5B|1|DA|A|2114
5J5B|1|DA|G|2115
5J5B|1|DA|G|2116
5J5B|1|DA|A|2117
5J5B|1|DA|U|2118
5J5B|1|DA|A|2119
5J5B|1|DA|G|2120
5J5B|1|DA|G|2121
5J5B|1|DA|U|2122
*
5J5B|1|DA|A|2176
5J5B|1|DA|C|2177
5J5B|1|DA|C|2178
5J5B|1|DA|C|2179
5J5B|1|DA|U|2180
5J5B|1|DA|U|2181
5J5B|1|DA|U|2182
5J5B|1|DA|A|2183
5J5B|1|DA|A|2184
5J5B|1|DA|U|2185
5J5B|1|DA|G|2186

Current chains

Chain DA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA