IL_5J7L_014

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

5J7L|1|AA|U|244, 5J7L|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

5J7L|1|AA|G|242
5J7L|1|AA|A|243
5J7L|1|AA|U|244
5J7L|1|AA|U|245
5J7L|1|AA|A|246
5J7L|1|AA|G|247
*
5J7L|1|AA|C|277
5J7L|1|AA|G|278
5J7L|1|AA|A|279
5J7L|1|AA|C|280
5J7L|1|AA|G|281
5J7L|1|AA|A|282
5J7L|1|AA|U|283
5J7L|1|AA|C|284

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17