IL_5J7L_023

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5J7L|1|AA|G|450
5J7L|1|AA|A|451
5J7L|1|AA|A|452
5J7L|1|AA|G|453
5J7L|1|AA|G|454
5J7L|1|AA|G|455
*
5J7L|1|AA|C|477
5J7L|1|AA|A|478
5J7L|1|AA|U|479
5J7L|1|AA|U|480
5J7L|1|AA|G|481
5J7L|1|AA|A|482
5J7L|1|AA|C|483

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16