IL_5J7L_038

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

5J7L|1|AA|G|887
5J7L|1|AA|G|888
5J7L|1|AA|A|889
5J7L|1|AA|G|890
5J7L|1|AA|U|891
5J7L|1|AA|A|892
5J7L|1|AA|C|893
5J7L|1|AA|G|894
*
5J7L|1|AA|U|905
5J7L|1|AA|A|906
5J7L|1|AA|A|907
5J7L|1|AA|A|908
5J7L|1|AA|A|909
5J7L|1|AA|C|910

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12