IL_5J7L_060

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GU(5MC)AC*GAAGUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J7L_060 not in the Motif Atlas

Homologous match to IL_4LFB_058

Geometric discrepancy: 0.4613

The information below is about IL_4LFB_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J7L|1|AA|G|1405
5J7L|1|AA|U|1406
5J7L|1|AA|5MC|1407
5J7L|1|AA|A|1408
5J7L|1|AA|C|1409
*
5J7L|1|AA|G|1491
5J7L|1|AA|A|1492
5J7L|1|AA|A|1493
5J7L|1|AA|G|1494
5J7L|1|AA|U|1495
5J7L|1|AA|C|1496

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain DA

Large subunit ribosomal RNA; LSU rRNA