IL_5J7L_091

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

5J7L|1|BA|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J7L_091 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0156

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

5J7L|1|BA|C|569
5J7L|1|BA|G|570
5J7L|1|BA|U|571
5J7L|1|BA|A|572
5J7L|1|BA|A|573
5J7L|1|BA|A|574
5J7L|1|BA|G|575
*
5J7L|1|BA|C|880
5J7L|1|BA|G|881

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BH

30S ribosomal protein S8

Chain BL

30S ribosomal protein S12

Chain BQ

30S ribosomal protein S17