IL_5J7L_113

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

5J7L|1|BA|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J7L_113 not in the Motif Atlas

Geometric match to IL_5J7L_049

Geometric discrepancy: 0.0187

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

5J7L|1|BA|U|1060
5J7L|1|BA|G|1061
*
5J7L|1|BA|C|1195
5J7L|1|BA|A|1196
5J7L|1|BA|A|1197

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BC

30S ribosomal protein S3

Chain BE

30S ribosomal protein S5

Chain BJ

30S ribosomal protein S10

Chain BN

30S ribosomal protein S14