IL_5J7L_120
3D structure
- PDB id
- 5J7L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGACC*GCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J7L_120 not in the Motif Atlas
- Homologous match to IL_5J7L_056
- Geometric discrepancy: 0.1256
- The information below is about IL_5J7L_056
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5J7L|1|BA|C|1259
5J7L|1|BA|G|1260
5J7L|1|BA|A|1261
5J7L|1|BA|C|1262
5J7L|1|BA|C|1263
*
5J7L|1|BA|G|1272
5J7L|1|BA|C|1273
5J7L|1|BA|A|1274
5J7L|1|BA|A|1275
5J7L|1|BA|G|1276
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BN
- 30S ribosomal protein S14
- Chain BS
- 30S ribosomal protein S19
Coloring options: