IL_5J7L_124
3D structure
- PDB id
- 5J7L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GU(5MC)AC*GAAGUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J7L_124 not in the Motif Atlas
- Homologous match to IL_6CZR_167
- Geometric discrepancy: 0.2499
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
5J7L|1|BA|G|1405
5J7L|1|BA|U|1406
5J7L|1|BA|5MC|1407
5J7L|1|BA|A|1408
5J7L|1|BA|C|1409
*
5J7L|1|BA|G|1491
5J7L|1|BA|A|1492
5J7L|1|BA|A|1493
5J7L|1|BA|G|1494
5J7L|1|BA|U|1495
5J7L|1|BA|C|1496
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BL
- 30S ribosomal protein S12
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: