IL_5J7L_130

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J7L_130 not in the Motif Atlas

Homologous match to IL_5J7L_245

Geometric discrepancy: 0.0734

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5J7L|1|CA|G|24
5J7L|1|CA|U|25
5J7L|1|CA|G|26
5J7L|1|CA|G|27
5J7L|1|CA|A|28
5J7L|1|CA|U|29
5J7L|1|CA|G|30
*
5J7L|1|CA|C|510
5J7L|1|CA|U|511
5J7L|1|CA|G|512
5J7L|1|CA|A|513
5J7L|1|CA|A|514
5J7L|1|CA|A|515
5J7L|1|CA|C|516

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain CR

50S ribosomal protein L20

Chain CT

50S ribosomal protein L22