IL_5J7L_133

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

5J7L|1|CA|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J7L_133 not in the Motif Atlas

Homologous match to IL_5J7L_248

Geometric discrepancy: 0.2565

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

5J7L|1|CA|G|81
5J7L|1|CA|U|82
5J7L|1|CA|A|83
5J7L|1|CA|A|84
5J7L|1|CA|G|85
*
5J7L|1|CA|C|97
5J7L|1|CA|G|98
5J7L|1|CA|U|99
5J7L|1|CA|U|100
5J7L|1|CA|A|101
5J7L|1|CA|U|102
5J7L|1|CA|A|103
5J7L|1|CA|A|104
5J7L|1|CA|C|105

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CV

50S ribosomal protein L24

Chain CZ

50S ribosomal protein L29