IL_5J7L_172

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

5J7L|1|CA|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J7L_172 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.0783

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

5J7L|1|CA|G|1202
5J7L|1|CA|U|1203
5J7L|1|CA|A|1204
5J7L|1|CA|A|1205
5J7L|1|CA|G|1206
*
5J7L|1|CA|U|1240
5J7L|1|CA|A|1241
5J7L|1|CA|U|1242
5J7L|1|CA|C|1243

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CM

50S ribosomal protein L15