IL_5J7L_220

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGG*CA(OMC)CU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J7L_220 not in the Motif Atlas

Homologous match to IL_5J7L_335

Geometric discrepancy: 0.0815

The information below is about IL_5J7L_335

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J7L|1|CA|A|2453
5J7L|1|CA|G|2454
5J7L|1|CA|G|2455
*
5J7L|1|CA|C|2496
5J7L|1|CA|A|2497
5J7L|1|CA|OMC|2498
5J7L|1|CA|C|2499
5J7L|1|CA|U|2500

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein L3

Chain CN

50S ribosomal protein L16