IL_5J7L_251

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5J7L|1|DA|C|239
5J7L|1|DA|C|240
5J7L|1|DA|A|241
5J7L|1|DA|G|242
5J7L|1|DA|U|243
5J7L|1|DA|A|244
5J7L|1|DA|G|245
*
5J7L|1|DA|C|253
5J7L|1|DA|G|254
5J7L|1|DA|A|255
5J7L|1|DA|A|256
5J7L|1|DA|C|257
5J7L|1|DA|G|258

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L35

Chain DM

50S ribosomal protein L15