IL_5J7L_278

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_71457.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

5

Unit IDs

5J7L|1|DA|U|1004
5J7L|1|DA|C|1005
5J7L|1|DA|C|1006
5J7L|1|DA|C|1007
5J7L|1|DA|A|1008
5J7L|1|DA|A|1009
5J7L|1|DA|A|1010
5J7L|1|DA|G|1011
*
5J7L|1|DA|C|1150
5J7L|1|DA|A|1151

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DK

50S ribosomal protein L13

Chain DR

50S ribosomal protein L20