IL_5J7L_284

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

5J7L|1|DA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

5

Unit IDs

5J7L|1|DA|C|1043
5J7L|1|DA|C|1044
5J7L|1|DA|C|1045
5J7L|1|DA|A|1046
5J7L|1|DA|G|1047
5J7L|1|DA|A|1048
5J7L|1|DA|C|1049
5J7L|1|DA|A|1050
5J7L|1|DA|G|1051
*
5J7L|1|DA|U|1108
5J7L|1|DA|C|1109
5J7L|1|DA|G|1110
5J7L|1|DA|A|1111
5J7L|1|DA|G|1112

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D5

50S ribosomal protein L36

Chain DG

50S ribosomal protein L6

Chain DI

50S ribosomal protein L10