IL_5J7L_296

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

5J7L|1|DA|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5J7L|1|DA|G|1432
5J7L|1|DA|A|1433
5J7L|1|DA|A|1434
5J7L|1|DA|G|1435
*
5J7L|1|DA|C|1557
5J7L|1|DA|C|1558
5J7L|1|DA|U|1559
5J7L|1|DA|G|1560
5J7L|1|DA|C|1561

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2