IL_5J7L_346

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5J7L|1|DA|C|2652
5J7L|1|DA|U|2653
5J7L|1|DA|A|2654
5J7L|1|DA|G|2655
5J7L|1|DA|U|2656
5J7L|1|DA|A|2657
5J7L|1|DA|C|2658
*
5J7L|1|DA|G|2663
5J7L|1|DA|G|2664
5J7L|1|DA|A|2665
5J7L|1|DA|C|2666
5J7L|1|DA|C|2667
5J7L|1|DA|G|2668

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DG

50S ribosomal protein L6