IL_5J7L_358

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACCCC*GAACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.10

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

9

Unit IDs

5J7L|1|DB|A|34
5J7L|1|DB|C|35
5J7L|1|DB|C|36
5J7L|1|DB|C|37
5J7L|1|DB|C|38
*
5J7L|1|DB|G|44
5J7L|1|DB|A|45
5J7L|1|DB|A|46
5J7L|1|DB|C|47
5J7L|1|DB|U|48

Current chains

Chain DB

5S rRNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DF

50S ribosomal protein L5

Chain DP

50S ribosomal protein L18