IL_5J7L_359
3D structure
- PDB id
- 5J7L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5J7L|1|DB|C|71
5J7L|1|DB|G|72
5J7L|1|DB|A|73
5J7L|1|DB|U|74
5J7L|1|DB|G|75
5J7L|1|DB|G|76
5J7L|1|DB|U|77
5J7L|1|DB|A|78
5J7L|1|DB|G|79
*
5J7L|1|DB|C|97
5J7L|1|DB|G|98
5J7L|1|DB|A|99
5J7L|1|DB|G|100
5J7L|1|DB|A|101
5J7L|1|DB|G|102
5J7L|1|DB|U|103
5J7L|1|DB|A|104
5J7L|1|DB|G|105
Current chains
- Chain DB
- 5S rRNA
Nearby chains
- Chain D0
- 50S ribosomal protein L30
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DN
- 50S ribosomal protein L16
- Chain DW
- 50S ribosomal protein L25
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