IL_5J7L_361

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAAU*GGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

5J7L|1|AA|A|673
5J7L|1|AA|G|674
5J7L|1|AA|A|675
5J7L|1|AA|A|676
5J7L|1|AA|U|677
*
5J7L|1|AA|G|713
5J7L|1|AA|G|714
5J7L|1|AA|A|715
5J7L|1|AA|A|716
5J7L|1|AA|U|717

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AF

30S ribosomal protein S6

Chain AK

30S ribosomal protein S11

Chain AR

30S ribosomal protein S18

Chain AU

30S ribosomal protein S21

Chain DC

50S ribosomal protein L2