IL_5J88_048

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CAGUC*GUCAAG

Length

11 nucleotides

Bulged bases

5J88|1|AA|A|1196, 5J88|1|AA|A|1197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J88|1|AA|C|1059
5J88|1|AA|A|1060
5J88|1|AA|G|1061
5J88|1|AA|U|1062
5J88|1|AA|C|1063
*
5J88|1|AA|G|1193
5J88|1|AA|U|1194
5J88|1|AA|C|1195
5J88|1|AA|A|1196
5J88|1|AA|A|1197
5J88|1|AA|G|1198

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AE

30S ribosomal protein S5

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14