IL_5J88_064

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

UGA*UA

Length

5 nucleotides

Bulged bases

5J88|1|BA|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_064 not in the Motif Atlas

Homologous match to IL_5J7L_001

Geometric discrepancy: 0.0835

The information below is about IL_5J7L_001

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

5J88|1|BA|U|30
5J88|1|BA|G|31
5J88|1|BA|A|32
*
5J88|1|BA|U|552
5J88|1|BA|A|553

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BL

30S ribosomal protein S12