IL_5J88_083
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- UGAAGAAG*UGUAAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J88_083 not in the Motif Atlas
- Homologous match to IL_5J7L_020
- Geometric discrepancy: 0.0653
- The information below is about IL_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28026.3
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J88|1|BA|U|409
5J88|1|BA|G|410
5J88|1|BA|A|411
5J88|1|BA|A|412
5J88|1|BA|G|413
5J88|1|BA|A|414
5J88|1|BA|A|415
5J88|1|BA|G|416
*
5J88|1|BA|U|427
5J88|1|BA|G|428
5J88|1|BA|U|429
5J88|1|BA|A|430
5J88|1|BA|A|431
5J88|1|BA|A|432
5J88|1|BA|G|433
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain AK
- 30S ribosomal protein S11
- Chain BD
- 30S ribosomal protein S4
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: