IL_5J88_089

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

5J88|1|BA|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_089 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0599

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

5J88|1|BA|C|569
5J88|1|BA|G|570
5J88|1|BA|U|571
5J88|1|BA|A|572
5J88|1|BA|A|573
5J88|1|BA|A|574
5J88|1|BA|G|575
*
5J88|1|BA|C|880
5J88|1|BA|G|881

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BL

30S ribosomal protein S12

Chain BQ

30S ribosomal protein S17