IL_5J88_107
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- GAAGUU*AAUGUGCCUUCGGGAAC
- Length
- 23 nucleotides
- Bulged bases
- 5J88|1|BA|U|1030
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J88_107 not in the Motif Atlas
- Homologous match to IL_5J7L_045
- Geometric discrepancy: 0.0835
- The information below is about IL_5J7L_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_13394.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R
- Number of instances in this motif group
- 1
Unit IDs
5J88|1|BA|G|1003
5J88|1|BA|A|1004
5J88|1|BA|A|1005
5J88|1|BA|G|1006
5J88|1|BA|U|1007
5J88|1|BA|U|1008
*
5J88|1|BA|A|1021
5J88|1|BA|A|1022
5J88|1|BA|U|1023
5J88|1|BA|G|1024
5J88|1|BA|U|1025
5J88|1|BA|G|1026
5J88|1|BA|C|1027
5J88|1|BA|C|1028
5J88|1|BA|U|1029
5J88|1|BA|U|1030
5J88|1|BA|C|1031
5J88|1|BA|G|1032
5J88|1|BA|G|1033
5J88|1|BA|G|1034
5J88|1|BA|A|1035
5J88|1|BA|A|1036
5J88|1|BA|C|1037
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain AG
- 30S ribosomal protein S7
- Chain BN
- 30S ribosomal protein S14
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