IL_5J88_124

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_124 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.0585

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5J88|1|BA|G|1416
5J88|1|BA|G|1417
5J88|1|BA|A|1418
5J88|1|BA|G|1419
*
5J88|1|BA|U|1481
5J88|1|BA|G|1482
5J88|1|BA|A|1483
5J88|1|BA|C|1484

Current chains

Chain BA

16S rRNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA