IL_5J88_133
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J88_133 not in the Motif Atlas
- Homologous match to IL_5J7L_250
- Geometric discrepancy: 0.1007
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5J88|1|CA|G|188
5J88|1|CA|G|189
5J88|1|CA|A|190
5J88|1|CA|A|191
5J88|1|CA|C|192
5J88|1|CA|U|193
5J88|1|CA|G|194
*
5J88|1|CA|C|201
5J88|1|CA|U|202
5J88|1|CA|A|203
5J88|1|CA|A|204
5J88|1|CA|G|205
5J88|1|CA|U|206
5J88|1|CA|A|207
5J88|1|CA|C|208
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C3
- 50S ribosomal protein L34
- Chain C4
- 50S ribosomal protein L35
- Chain CM
- 50S ribosomal protein L15
- Chain CY
- 50S ribosomal protein L28
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