IL_5J88_136

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

5J88|1|CA|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_136 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.0738

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5J88|1|CA|C|274
5J88|1|CA|C|275
5J88|1|CA|U|276
5J88|1|CA|G|277
5J88|1|CA|A|278
5J88|1|CA|A|279
5J88|1|CA|U|280
5J88|1|CA|C|281
*
5J88|1|CA|G|359
5J88|1|CA|U|360
5J88|1|CA|G|361
5J88|1|CA|A|362
5J88|1|CA|G|363

Current chains

Chain CA

23S rRNA

Nearby chains