IL_5J88_145

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

UU*GGA

Length

5 nucleotides

Bulged bases

5J88|1|CA|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_145 not in the Motif Atlas

Geometric match to IL_5TBW_029

Geometric discrepancy: 0.1057

The information below is about IL_5TBW_029

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

5J88|1|CA|U|702
5J88|1|CA|U|703
*
5J88|1|CA|G|728
5J88|1|CA|G|729
5J88|1|CA|A|730

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2