IL_5J88_169

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

5J88|1|CA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_169 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2637

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

5J88|1|CA|G|1087
5J88|1|CA|A|1088
5J88|1|CA|A|1089
5J88|1|CA|A|1090
5J88|1|CA|G|1091
*
5J88|1|CA|C|1100
5J88|1|CA|U|1101
5J88|1|CA|C|1102

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein L36

Chain CG

50S ribosomal protein L6

Chain CJ

50S ribosomal protein L11