IL_5J88_218

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

C(PSU)GA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_218 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.2704

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

5J88|1|CA|C|2456
5J88|1|CA|PSU|2457
5J88|1|CA|G|2458
5J88|1|CA|A|2459
*
5J88|1|CA|U|2493
5J88|1|CA|G|2494
5J88|1|CA|G|2495

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CN

50S ribosomal protein L16