IL_5J88_252

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

5J88|1|DA|A|504, 5J88|1|DA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_252 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0557

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

5J88|1|DA|G|481
5J88|1|DA|A|482
5J88|1|DA|A|483
5J88|1|DA|C|484
*
5J88|1|DA|G|496
5J88|1|DA|A|497
5J88|1|DA|G|498
5J88|1|DA|U|499
5J88|1|DA|G|500
5J88|1|DA|A|501
5J88|1|DA|A|502
5J88|1|DA|A|503
5J88|1|DA|A|504
5J88|1|DA|A|505
5J88|1|DA|G|506
5J88|1|DA|A|507
5J88|1|DA|A|508
5J88|1|DA|C|509

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DT

50S ribosomal protein L22

Chain DV

50S ribosomal protein L24