IL_5J88_321

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

5J88|1|DA|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_321 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.0513

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5J88|1|DA|U|2081
5J88|1|DA|A|2082
5J88|1|DA|G|2083
*
5J88|1|DA|U|2236
5J88|1|DA|G|2237
5J88|1|DA|G|2238
5J88|1|DA|G|2239

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2

Chain DY

50S ribosomal protein L28