IL_5J88_324

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GAUGUGUAGGAUAGGUG*CACCCUUU

Length

25 nucleotides

Bulged bases

5J88|1|DA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_324 not in the Motif Atlas

Geometric match to IL_5J7L_328

Geometric discrepancy: 0.0741

The information below is about IL_5J7L_328

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20245.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

5J88|1|DA|G|2107
5J88|1|DA|A|2108
5J88|1|DA|U|2109
5J88|1|DA|G|2110
5J88|1|DA|U|2111
5J88|1|DA|G|2112
5J88|1|DA|U|2113
5J88|1|DA|A|2114
5J88|1|DA|G|2115
5J88|1|DA|G|2116
5J88|1|DA|A|2117
5J88|1|DA|U|2118
5J88|1|DA|A|2119
5J88|1|DA|G|2120
5J88|1|DA|G|2121
5J88|1|DA|U|2122
5J88|1|DA|G|2123
*
5J88|1|DA|C|2175
5J88|1|DA|A|2176
5J88|1|DA|C|2177
5J88|1|DA|C|2178
5J88|1|DA|C|2179
5J88|1|DA|U|2180
5J88|1|DA|U|2181
5J88|1|DA|U|2182

Current chains

Chain DA

23S rRNA

Nearby chains