IL_5J88_325

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GGGAGG*CCGACCUUGAAAUACC

Length

22 nucleotides

Bulged bases

5J88|1|DA|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_325 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.0625

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5J88|1|DA|G|2123
5J88|1|DA|G|2124
5J88|1|DA|G|2125
5J88|1|DA|A|2126
5J88|1|DA|G|2127
5J88|1|DA|G|2128
*
5J88|1|DA|C|2160
5J88|1|DA|C|2161
5J88|1|DA|G|2162
5J88|1|DA|A|2163
5J88|1|DA|C|2164
5J88|1|DA|C|2165
5J88|1|DA|U|2166
5J88|1|DA|U|2167
5J88|1|DA|G|2168
5J88|1|DA|A|2169
5J88|1|DA|A|2170
5J88|1|DA|A|2171
5J88|1|DA|U|2172
5J88|1|DA|A|2173
5J88|1|DA|C|2174
5J88|1|DA|C|2175

Current chains

Chain DA

23S rRNA

Nearby chains