IL_5J88_350

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_350 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.0558

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

5J88|1|DA|U|2847
5J88|1|DA|G|2848
5J88|1|DA|U|2849
5J88|1|DA|A|2850
5J88|1|DA|A|2851
5J88|1|DA|G|2852
*
5J88|1|DA|U|2865
5J88|1|DA|U|2866
5J88|1|DA|G|2867
5J88|1|DA|A|2868
5J88|1|DA|G|2869

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DO

50S ribosomal protein L17

Chain DQ

50S ribosomal protein L19