IL_5J88_367

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GCAG*CAAGU

Length

9 nucleotides

Bulged bases

5J88|1|BA|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J88|1|BA|G|1058
5J88|1|BA|C|1059
5J88|1|BA|A|1060
5J88|1|BA|G|1061
*
5J88|1|BA|C|1195
5J88|1|BA|A|1196
5J88|1|BA|A|1197
5J88|1|BA|G|1198
5J88|1|BA|U|1199

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BC

30S ribosomal protein S3

Chain BE

30S ribosomal protein S5

Chain BJ

30S ribosomal protein S10

Chain BN

30S ribosomal protein S14