IL_5J88_371

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

5J88|1|CA|U|846, 5J88|1|CA|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_371 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.3021

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

5J88|1|CA|A|844
5J88|1|CA|A|845
5J88|1|CA|U|846
5J88|1|CA|U|847
5J88|1|CA|C|848
*
5J88|1|CA|G|930
5J88|1|CA|U|931
5J88|1|CA|U|932
5J88|1|CA|A|933
5J88|1|CA|U|934

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C0

50S ribosomal protein L30