IL_5J88_382

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5J88|1|CA|U|2131, 5J88|1|CA|U|2132, 5J88|1|CA|A|2158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_382 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.3004

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5J88|1|CA|C|2129
5J88|1|CA|U|2130
5J88|1|CA|U|2131
5J88|1|CA|U|2132
5J88|1|CA|G|2133
5J88|1|CA|A|2134
5J88|1|CA|A|2135
5J88|1|CA|G|2136
*
5J88|1|CA|U|2155
5J88|1|CA|G|2156
5J88|1|CA|G|2157
5J88|1|CA|A|2158
5J88|1|CA|G|2159

Current chains

Chain CA

23S rRNA

Nearby chains