IL_5J88_397

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GAAGUUUUC*GAGAAUGUGCCUUCGGGAAC

Length

29 nucleotides

Bulged bases

5J88|1|BA|U|1030, 5J88|1|BA|C|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J88|1|BA|G|1003
5J88|1|BA|A|1004
5J88|1|BA|A|1005
5J88|1|BA|G|1006
5J88|1|BA|U|1007
5J88|1|BA|U|1008
5J88|1|BA|U|1009
5J88|1|BA|U|1010
5J88|1|BA|C|1011
*
5J88|1|BA|G|1018
5J88|1|BA|A|1019
5J88|1|BA|G|1020
5J88|1|BA|A|1021
5J88|1|BA|A|1022
5J88|1|BA|U|1023
5J88|1|BA|G|1024
5J88|1|BA|U|1025
5J88|1|BA|G|1026
5J88|1|BA|C|1027
5J88|1|BA|C|1028
5J88|1|BA|U|1029
5J88|1|BA|U|1030
5J88|1|BA|C|1031
5J88|1|BA|G|1032
5J88|1|BA|G|1033
5J88|1|BA|G|1034
5J88|1|BA|A|1035
5J88|1|BA|A|1036
5J88|1|BA|C|1037

Current chains

Chain BA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain BN

30S ribosomal protein S14

Chain BS

30S ribosomal protein S19