IL_5J8A_025

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

5J8A|1|AA|A|532, 5J8A|1|AA|U|534

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_025 not in the Motif Atlas

Homologous match to IL_5J7L_025

Geometric discrepancy: 0.0186

The information below is about IL_5J7L_025

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5J8A|1|AA|G|515
5J8A|1|AA|PSU|516
5J8A|1|AA|G|517
5J8A|1|AA|C|518
5J8A|1|AA|C|519
5J8A|1|AA|A|520
5J8A|1|AA|G|521
*
5J8A|1|AA|C|528
5J8A|1|AA|G|529
5J8A|1|AA|G|530
5J8A|1|AA|U|531
5J8A|1|AA|A|532
5J8A|1|AA|A|533
5J8A|1|AA|U|534
5J8A|1|AA|A|535
5J8A|1|AA|C|536

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12