IL_5J8A_045

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAGUU*AAUGUGCCUUCGGGAAC

Length

23 nucleotides

Bulged bases

5J8A|1|AA|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_045 not in the Motif Atlas

Geometric match to IL_5J7L_045

Geometric discrepancy: 0.0072

The information below is about IL_5J7L_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_13394.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

Number of instances in this motif group

1

Unit IDs

5J8A|1|AA|G|1003
5J8A|1|AA|A|1004
5J8A|1|AA|A|1005
5J8A|1|AA|G|1006
5J8A|1|AA|U|1007
5J8A|1|AA|U|1008
*
5J8A|1|AA|A|1021
5J8A|1|AA|A|1022
5J8A|1|AA|U|1023
5J8A|1|AA|G|1024
5J8A|1|AA|U|1025
5J8A|1|AA|G|1026
5J8A|1|AA|C|1027
5J8A|1|AA|C|1028
5J8A|1|AA|U|1029
5J8A|1|AA|U|1030
5J8A|1|AA|C|1031
5J8A|1|AA|G|1032
5J8A|1|AA|G|1033
5J8A|1|AA|G|1034
5J8A|1|AA|A|1035
5J8A|1|AA|A|1036
5J8A|1|AA|C|1037

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14