IL_5J8A_047

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGGCAU*AUG(2MG)C

Length

12 nucleotides

Bulged bases

5J8A|1|AA|C|1054

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_047 not in the Motif Atlas

Homologous match to IL_5J7L_047

Geometric discrepancy: 0.0274

The information below is about IL_5J7L_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J8A|1|AA|G|1050
5J8A|1|AA|C|1051
5J8A|1|AA|G|1052
5J8A|1|AA|G|1053
5J8A|1|AA|C|1054
5J8A|1|AA|A|1055
5J8A|1|AA|U|1056
*
5J8A|1|AA|A|1204
5J8A|1|AA|U|1205
5J8A|1|AA|G|1206
5J8A|1|AA|2MG|1207
5J8A|1|AA|C|1208

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14